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NameTDescription# Ann.AuthorMaintainerUpdated_at Status

101-120 / 238 show all
LitCovid-sample-Pubtator 3.86 KJin-Dong Kim2023-11-28Uploading
uniprot-mouse Protein annotation based on UniProt11.5 KJin-Dong Kim2023-11-28Developing
funRiceGenes-exact 841Yue Wang2023-11-28Developing
LitCovid-PD-FMA-UBERON 1.3 MJin-Dong Kim2023-11-28Developing
GlycoBiology-GDGDB GDGDB-based annotation to GlycoBiology abstracts 2.46 KToshihide Shikanaishikanai2023-11-29Testing
sonoma2 sonoma29.09 KStandigmchanung2023-11-29Beta
spacy-test Random set of articles used for testing in the development of the RESTful spaCy parsing web service. Since development is now finished, they are released for the community to use.131 KNico ColicNico Colic2023-11-29Released
test_HZAU_BioNLP 274AikoHIRAKI2023-11-29Testing
PT_NER_NEL Annotations in Portuguese COVID-19 related abstracts from MeSH terminology245LASIGE-DeSTpruas_182023-11-29Developing
bionlp-st-ge-2016-uniprot UniProt protein annotation to the benchmark data set of BioNLP-ST 2016 GE task: reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test). The annotations are produced based on a dictionary which is semi-automatically compiled for the 34 full paper articles included in the benchmark data set (20 in the reference data set + 14 in the test data set). For detailed information about BioNLP-ST GE 2016 task data sets, please refer to the benchmark reference data set (bionlp-st-ge-2016-reference) and benchmark test data set (bionlp-st-ge-2016-test). 16.2 KDBCLSJin-Dong Kim2023-11-29Beta
LitCoin-Chemical-MeSH-CHEBI ChemicalEntity: Annotated by PD-MeSH2022_CHEBI_tuned-B3.84 Kyucca2023-11-29Testing
excludesZoonoses 25AikoHIRAKI2023-11-29Developing
LitCovid-sample-HP 0Jin-Dong Kim2023-11-29Testing
GlycoBiology-Motifs 4.15 KJin-Dong Kim2023-11-29
CORD-19-PD-HP PubDictionaries annotation for HP terms - updated at 2020-04-30 Disease term annotation based on HP. Version 2020-04-20. The terms in HP are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.1.15 MJin-Dong Kim2023-11-29Released
ggdb-test 2.4 KJin-Dong Kim2023-11-29Testing
LitCovid_AGAC 904xiajingbo2023-11-29
0mytest 144Yue Wang2023-11-29
bionlp-st-ge-2016-spacy-parsed Dependency parses produced by spaCy parser, and part-of-speech tags produced by Stanford tagger (with the wsj-0-18-left3words-nodistsim model). The exact procedure is described here. Data set contains the 34 full paper articles used in the BioNLP 2016 GE task. 225 KNico ColicNico Colic2023-11-29Released
EDAM-topics annotation for EDAM topics11.6 KJin-Dong Kim2023-11-29Testing
NameT# Ann.AuthorMaintainerUpdated_at Status

101-120 / 238 show all
LitCovid-sample-Pubtator 3.86 KJin-Dong Kim2023-11-28Uploading
uniprot-mouse 11.5 KJin-Dong Kim2023-11-28Developing
funRiceGenes-exact 841Yue Wang2023-11-28Developing
LitCovid-PD-FMA-UBERON 1.3 MJin-Dong Kim2023-11-28Developing
GlycoBiology-GDGDB 2.46 KToshihide Shikanaishikanai2023-11-29Testing
sonoma2 9.09 KStandigmchanung2023-11-29Beta
spacy-test 131 KNico ColicNico Colic2023-11-29Released
test_HZAU_BioNLP 274AikoHIRAKI2023-11-29Testing
PT_NER_NEL 245LASIGE-DeSTpruas_182023-11-29Developing
bionlp-st-ge-2016-uniprot 16.2 KDBCLSJin-Dong Kim2023-11-29Beta
LitCoin-Chemical-MeSH-CHEBI 3.84 Kyucca2023-11-29Testing
excludesZoonoses 25AikoHIRAKI2023-11-29Developing
LitCovid-sample-HP 0Jin-Dong Kim2023-11-29Testing
GlycoBiology-Motifs 4.15 KJin-Dong Kim2023-11-29
CORD-19-PD-HP 1.15 MJin-Dong Kim2023-11-29Released
ggdb-test 2.4 KJin-Dong Kim2023-11-29Testing
LitCovid_AGAC 904xiajingbo2023-11-29
0mytest 144Yue Wang2023-11-29
bionlp-st-ge-2016-spacy-parsed 225 KNico ColicNico Colic2023-11-29Released
EDAM-topics 11.6 KJin-Dong Kim2023-11-29Testing