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NameTDescription# Ann.AuthorMaintainerUpdated_at Status

1-20 / 114 show all
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2015-03-15Testing
BioASQ-sample collection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2015-10-13Testing
SPECIES800_autotagged This project comprises the SPECIES800 corpus documents automatically annotated by the Jensenlab tagger. Annotated entity types are: Genes/proteins from the mentioned organisms (and any human ones) PubChem Compound identifiers NCBI Taxonomy entries Gene Ontology cellular component terms BRENDA Tissue Ontology terms Disease Ontology terms Environment Ontology terms The SPECIES 800 (S800) comprises 800 PubMed abstracts. In its original form species mentions were manually identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.0065390. The manually annotated corpus is also available as a PubAnnotation project (see here). 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
relna https://www.tagtog.net/jmcejuela/relna2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2015-11-25Developing
pubtator-sample Sample annotation of PubTator produced by Zhiyong Lu et al.28Zhiyong LuJin-Dong Kim2016-01-19Testing
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2016-01-28Beta
GlycoBiology-PACDB cGGDB-based annotation to GlycoBiology abstracts3.03 KToshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-GDGDB GDGDB-based annotation to GlycoBiology abstracts 2.46 KToshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-cGGDB cGGDB-based annotation to GlycoBiology abstracts36Toshihide Shikanaishikanai2016-02-01Testing
uniprot-mouse Protein annotation based on UniProt11.5 KJin-Dong Kim2016-04-27Developing
IMDB-NLP Annotations for chunking and semantic role labeling based on in-memory databases.02016-05-06Uploading
GlycoBiology-GO GO-based annotation to GlycoBiology abstracts0Jin-Dong Kim2016-06-11Testing
EDAM-DFO annotation for EDAM terms for data, formats, and operations12.5 KJin-Dong Kim2016-09-21Testing
EDAM-topics annotation for EDAM topics11.6 KJin-Dong Kim2016-09-21Testing
FSU-PRGE A new broad-coverage corpus composed of 3,306 MEDLINE abstracts dealing with gene and protein mentions. The annotation process was semi-automatic. Publication: http://aclweb.org/anthology/W/W10/W10-1838.pdf59.5 KCALBC ProjectYue Wang2017-03-08Released
Parkinson 54Jin-Dong Kim2017-03-11Testing
AlvisNLP-Async-Test Test for the asynchronous AlvisNLP/ML annotator family.0Robert Bossyrbossy2017-04-07Testing
Test_economics test1YongHwanKimkimyonghwan2017-07-13Testing
PubMed-2017 abstracts published in 2017.0Jin-Dong Kim2017-09-01Developing
PubMed-2000 abstracts published in 2000.0Jin-Dong Kim2017-09-01Developing
NameT# Ann.AuthorMaintainerUpdated_at Status

1-20 / 114 show all
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2015-03-15Testing
BioASQ-sample 0BioASQJin-Dong Kim2015-10-13Testing
SPECIES800_autotagged 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
relna 2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2015-11-25Developing
pubtator-sample 28Zhiyong LuJin-Dong Kim2016-01-19Testing
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2016-01-28Beta
GlycoBiology-PACDB 3.03 KToshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-GDGDB 2.46 KToshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-cGGDB 36Toshihide Shikanaishikanai2016-02-01Testing
uniprot-mouse 11.5 KJin-Dong Kim2016-04-27Developing
IMDB-NLP 02016-05-06Uploading
GlycoBiology-GO 0Jin-Dong Kim2016-06-11Testing
EDAM-DFO 12.5 KJin-Dong Kim2016-09-21Testing
EDAM-topics 11.6 KJin-Dong Kim2016-09-21Testing
FSU-PRGE 59.5 KCALBC ProjectYue Wang2017-03-08Released
Parkinson 54Jin-Dong Kim2017-03-11Testing
AlvisNLP-Async-Test 0Robert Bossyrbossy2017-04-07Testing
Test_economics 1YongHwanKimkimyonghwan2017-07-13Testing
PubMed-2017 0Jin-Dong Kim2017-09-01Developing
PubMed-2000 0Jin-Dong Kim2017-09-01Developing