> top > projects

Projects

NameTDescription# Ann.AuthorMaintainerUpdated_at Status

1-20 / 119 show all
EVEX-test 104 KSampo Pyysalospyysalo2015-02-26Testing
EVEX-test-2 103 KSampo Pyysalospyysalo2015-02-27Testing
EVEX-test-3 66.7 KSampo Pyysalospyysalo2015-02-27Testing
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2015-03-15Testing
BioASQ-sample collection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2015-10-13Testing
SPECIES800_autotagged This project comprises the SPECIES800 corpus documents automatically annotated by the Jensenlab tagger. Annotated entity types are: Genes/proteins from the mentioned organisms (and any human ones) PubChem Compound identifiers NCBI Taxonomy entries Gene Ontology cellular component terms BRENDA Tissue Ontology terms Disease Ontology terms Environment Ontology terms The SPECIES 800 (S800) comprises 800 PubMed abstracts. In its original form species mentions were manually identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.0065390. The manually annotated corpus is also available as a PubAnnotation project (see here). 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
relna https://www.tagtog.net/jmcejuela/relna2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2015-11-25Developing
prefixtest test of prefix functionality2Samposmp2015-11-25Testing
biosemtest test submitting Peregrine annotations35.6 KMark Thompsonmarkthompson2015-12-17Testing
pubtator-sample Sample annotation of PubTator produced by Zhiyong Lu et al.28Zhiyong LuJin-Dong Kim2016-01-19Testing
EVEXDB 11.2 MEVEXDBsmp2016-01-28Testing
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2016-01-28Beta
GlycoBiology-PACDB cGGDB-based annotation to GlycoBiology abstracts3.03 KToshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-GDGDB GDGDB-based annotation to GlycoBiology abstracts 2.46 KToshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-cGGDB cGGDB-based annotation to GlycoBiology abstracts36Toshihide Shikanaishikanai2016-02-01Testing
NEUROSES This corpus is composed of PubMed articles containing cognitive enhancers and anti-depressants drug mentions. The selected sentences are automatically annotated using the NCBO Annotator with the Chemical Entities of Biological Interest (CHEBI) and Phenotypic Quality Ontology (PATO) ontologies, we also produced annotations using PhenoMiner ontology via a dictionary-based tagger.2.15 Mnestoralvaro2016-02-24Beta
uniprot-mouse Protein annotation based on UniProt11.5 KJin-Dong Kim2016-04-27Developing
ICD10 Annotation for disease names as defined in ICD101.6 KDBCLSJin-Dong Kim2016-05-04Developing
IMDB-NLP Annotations for chunking and semantic role labeling based on in-memory databases.02016-05-06Uploading
bionlp-st-ge-2016-test-ihmc 14.4 KLucian Galescu2016-05-15Testing
NameT# Ann.AuthorMaintainerUpdated_at Status

1-20 / 119 show all
EVEX-test 104 KSampo Pyysalospyysalo2015-02-26Testing
EVEX-test-2 103 KSampo Pyysalospyysalo2015-02-27Testing
EVEX-test-3 66.7 KSampo Pyysalospyysalo2015-02-27Testing
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2015-03-15Testing
BioASQ-sample 0BioASQJin-Dong Kim2015-10-13Testing
SPECIES800_autotagged 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
relna 2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2015-11-25Developing
prefixtest 2Samposmp2015-11-25Testing
biosemtest 35.6 KMark Thompsonmarkthompson2015-12-17Testing
pubtator-sample 28Zhiyong LuJin-Dong Kim2016-01-19Testing
EVEXDB 11.2 MEVEXDBsmp2016-01-28Testing
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2016-01-28Beta
GlycoBiology-PACDB 3.03 KToshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-GDGDB 2.46 KToshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-cGGDB 36Toshihide Shikanaishikanai2016-02-01Testing
NEUROSES 2.15 Mnestoralvaro2016-02-24Beta
uniprot-mouse 11.5 KJin-Dong Kim2016-04-27Developing
ICD10 1.6 KDBCLSJin-Dong Kim2016-05-04Developing
IMDB-NLP 02016-05-06Uploading
bionlp-st-ge-2016-test-ihmc 14.4 KLucian Galescu2016-05-15Testing