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NameT Description# Ann.AuthorMaintainerUpdated_atStatus

1-20 / 119 show all
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2015-03-15Testing
EVEXDB 11.2 MEVEXDBsmp2016-01-28Testing
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2016-01-28Beta
pubtator-sample Sample annotation of PubTator produced by Zhiyong Lu et al.28Zhiyong LuJin-Dong Kim2016-01-19Testing
AGCA_Sue Active Gene Annotation Corpus for the Application in Drug Repurposing Discovery0Jingbo Xia, Xuan Qin, Kaiyin Zhou2017-11-13Developing
SPECIES800_autotagged This project comprises the SPECIES800 corpus documents automatically annotated by the Jensenlab tagger. Annotated entity types are: Genes/proteins from the mentioned organisms (and any human ones) PubChem Compound identifiers NCBI Taxonomy entries Gene Ontology cellular component terms BRENDA Tissue Ontology terms Disease Ontology terms Environment Ontology terms The SPECIES 800 (S800) comprises 800 PubMed abstracts. In its original form species mentions were manually identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.0065390. The manually annotated corpus is also available as a PubAnnotation project (see here). 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
prefixtest test of prefix functionality2Samposmp2015-11-25Testing
biosemtest test submitting Peregrine annotations35.6 KMark Thompsonmarkthompson2015-12-17Testing
EVEX-test-3 66.7 KSampo Pyysalospyysalo2015-02-27Testing
EVEX-test 104 KSampo Pyysalospyysalo2015-02-26Testing
GlycoBiology-cGGDB cGGDB-based annotation to GlycoBiology abstracts36Toshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-PACDB cGGDB-based annotation to GlycoBiology abstracts3.03 KToshihide Shikanaishikanai2016-02-01Testing
pmc-enju-pas Predicate-argument structure annotation produced by Enju. This data set is initially produced as a supporting resource for BioNLP-ST 2016 GE task. As so, it currently includes the 34 full paper articles that are in the benchmark data sets of GE 2016 task, reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test), but will be extended to include more papers from the PubMed Central Open Access subset (PMCOA). 205 KDBCLSJin-Dong Kim2017-11-07Developing
EVEX-test-2 103 KSampo Pyysalospyysalo2015-02-27Testing
relna https://www.tagtog.net/jmcejuela/relna2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2015-11-25Developing
GlycoBiology-FMA FMA ontology-based annotation to GlycoBiology abstracts96.3 KJin-Dong Kim2020-02-05Testing
NEUROSES This corpus is composed of PubMed articles containing cognitive enhancers and anti-depressants drug mentions. The selected sentences are automatically annotated using the NCBO Annotator with the Chemical Entities of Biological Interest (CHEBI) and Phenotypic Quality Ontology (PATO) ontologies, we also produced annotations using PhenoMiner ontology via a dictionary-based tagger.2.15 Mnestoralvaro2016-02-24Beta
GlycoBiology-GDGDB GDGDB-based annotation to GlycoBiology abstracts 2.46 KToshihide Shikanaishikanai2016-02-01Testing
uniprot-mouse Protein annotation based on UniProt11.5 KJin-Dong Kim2016-04-27Developing
BioASQ-sample collection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2015-10-13Testing
NameT # Ann.AuthorMaintainerUpdated_atStatus

1-20 / 119 show all
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2015-03-15Testing
EVEXDB 11.2 MEVEXDBsmp2016-01-28Testing
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2016-01-28Beta
pubtator-sample 28Zhiyong LuJin-Dong Kim2016-01-19Testing
AGCA_Sue 0Jingbo Xia, Xuan Qin, Kaiyin Zhou2017-11-13Developing
SPECIES800_autotagged 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
prefixtest 2Samposmp2015-11-25Testing
biosemtest 35.6 KMark Thompsonmarkthompson2015-12-17Testing
EVEX-test-3 66.7 KSampo Pyysalospyysalo2015-02-27Testing
EVEX-test 104 KSampo Pyysalospyysalo2015-02-26Testing
GlycoBiology-cGGDB 36Toshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-PACDB 3.03 KToshihide Shikanaishikanai2016-02-01Testing
pmc-enju-pas 205 KDBCLSJin-Dong Kim2017-11-07Developing
EVEX-test-2 103 KSampo Pyysalospyysalo2015-02-27Testing
relna 2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2015-11-25Developing
GlycoBiology-FMA 96.3 KJin-Dong Kim2020-02-05Testing
NEUROSES 2.15 Mnestoralvaro2016-02-24Beta
GlycoBiology-GDGDB 2.46 KToshihide Shikanaishikanai2016-02-01Testing
uniprot-mouse 11.5 KJin-Dong Kim2016-04-27Developing
BioASQ-sample 0BioASQJin-Dong Kim2015-10-13Testing