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NameT Description# Ann.AuthorMaintainerUpdated_atStatus

1-20 / 114 show all
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2015-03-15Testing
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2016-01-28Beta
pubtator-sample Sample annotation of PubTator produced by Zhiyong Lu et al.28Zhiyong LuJin-Dong Kim2016-01-19Testing
AGCA_Sue Active Gene Annotation Corpus for the Application in Drug Repurposing Discovery0Jingbo Xia, Xuan Qin, Kaiyin Zhou2017-11-13Developing
SPECIES800_autotagged This project comprises the SPECIES800 corpus documents automatically annotated by the Jensenlab tagger. Annotated entity types are: Genes/proteins from the mentioned organisms (and any human ones) PubChem Compound identifiers NCBI Taxonomy entries Gene Ontology cellular component terms BRENDA Tissue Ontology terms Disease Ontology terms Environment Ontology terms The SPECIES 800 (S800) comprises 800 PubMed abstracts. In its original form species mentions were manually identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.0065390. The manually annotated corpus is also available as a PubAnnotation project (see here). 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
test_sonoma 0Chanung2020-07-29Testing
GlycoBiology-cGGDB cGGDB-based annotation to GlycoBiology abstracts36Toshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-PACDB cGGDB-based annotation to GlycoBiology abstracts3.03 KToshihide Shikanaishikanai2016-02-01Testing
relna https://www.tagtog.net/jmcejuela/relna2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2015-11-25Developing
GlycoBiology-FMA FMA ontology-based annotation to GlycoBiology abstracts96.3 KJin-Dong Kim2020-02-05Testing
GlycoBiology-GDGDB GDGDB-based annotation to GlycoBiology abstracts 2.46 KToshihide Shikanaishikanai2016-02-01Testing
uniprot-mouse Protein annotation based on UniProt11.5 KJin-Dong Kim2016-04-27Developing
IMDB-NLP Annotations for chunking and semantic role labeling based on in-memory databases.02016-05-06Uploading
EDAM-DFO annotation for EDAM terms for data, formats, and operations12.5 KJin-Dong Kim2016-09-21Testing
GlycoBiology-GO GO-based annotation to GlycoBiology abstracts0Jin-Dong Kim2016-06-11Testing
EDAM-topics annotation for EDAM topics11.6 KJin-Dong Kim2016-09-21Testing
Test_economics test1YongHwanKimkimyonghwan2017-07-13Testing
GlyCosmos600-MAT 863Jin-Dong Kim2019-07-10Testing
GlycoBiology-Epitope GlycoEpitope-based annotation to GlycoBiology abstracts3.18 KShujiro Okudashuo502018-02-15Testing
BioASQ-sample collection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2015-10-13Testing
NameT # Ann.AuthorMaintainerUpdated_atStatus

1-20 / 114 show all
BLAH2015_Annotations_Adderall 0nestoralvaronestoralvaro2015-03-15Testing
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2016-01-28Beta
pubtator-sample 28Zhiyong LuJin-Dong Kim2016-01-19Testing
AGCA_Sue 0Jingbo Xia, Xuan Qin, Kaiyin Zhou2017-11-13Developing
SPECIES800_autotagged 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
test_sonoma 0Chanung2020-07-29Testing
GlycoBiology-cGGDB 36Toshihide Shikanaishikanai2016-02-01Testing
GlycoBiology-PACDB 3.03 KToshihide Shikanaishikanai2016-02-01Testing
relna 2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2015-11-25Developing
GlycoBiology-FMA 96.3 KJin-Dong Kim2020-02-05Testing
GlycoBiology-GDGDB 2.46 KToshihide Shikanaishikanai2016-02-01Testing
uniprot-mouse 11.5 KJin-Dong Kim2016-04-27Developing
IMDB-NLP 02016-05-06Uploading
EDAM-DFO 12.5 KJin-Dong Kim2016-09-21Testing
GlycoBiology-GO 0Jin-Dong Kim2016-06-11Testing
EDAM-topics 11.6 KJin-Dong Kim2016-09-21Testing
Test_economics 1YongHwanKimkimyonghwan2017-07-13Testing
GlyCosmos600-MAT 863Jin-Dong Kim2019-07-10Testing
GlycoBiology-Epitope 3.18 KShujiro Okudashuo502018-02-15Testing
BioASQ-sample 0BioASQJin-Dong Kim2015-10-13Testing