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Name TDescription# Ann.AuthorMaintainerUpdated_atStatus

41-60 / 238 show all
CORD-19-Sentences 13.4 MJin-Dong Kim2023-11-24Testing
CORD-PICO Automatic annotation of the CORD-19 dataset with PICO categories. The corpus was automatically labeled with an LSTM-CRF model trained on human-annotated PubMed abstracts from https://github.com/bepnye/EBM-NLP. Currently, titles and abstracts only are annotated using Population, Intervention and Outcome labels, as well as more fine-grained labels such as Age, Drug, Mortality and others.69.6 KSimon Susterssuster2023-11-27Developing
Covid19_manual_annotation_v2 4.58 KAikoHIRAKI2023-11-24Developing
craft-sa-dev Development data for CRAFT SA shared task. This project contains the development (training) annotations for the Structural Annotation task of the CRAFT Shared Task 2019. This particular set contains token and sentence annotations with tokens linked via dependency relations. These dependency relations were automatically generated using the manually curated CRAFT constituency treebank files as input.490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
demo4TogoSite 323AikoHIRAKI2023-11-26Developing
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
DisGeNet-2017-sample 2.93 KJin-Dong Kim2023-11-29Testing
DisGeNET5_gene_disease The file contains gene-disease associations obtained by text mining MEDLINE abstracts using the BeFree system including the gene and disease off sets.2.04 MIBI GroupYue Wang2023-11-24Released
DisGeNET5_variant_disease The file contains variant-disease associations obtained by text mining MEDLINE abstracts using the BeFree system, including the variant and disease off sets. 144 KIBI GroupYue Wang2023-11-24Released
EDAM-DFO annotation for EDAM terms for data, formats, and operations12.5 KJin-Dong Kim2023-11-29Testing
EDAM-topics annotation for EDAM topics11.6 KJin-Dong Kim2023-11-29Testing
ENG_NER_NEL Annotations in COVID-19 related PubMed abstracts from the following ontologies: Disease Ontology ("do"), Gene Ontology ("go"), Human Phenotype Ontology ("hpo"), ChEBI ontology ("chebi"), MeSH 493LASIGE-DeSTpruas_182023-11-26Developing
ENG_RE Entities and relations annotations from the following ontologies: Disease Ontology ('DO'), Gene Ontology ('GO'), Human Phenotype Ontology ('HPO'), and ChEBI ontology ('CHEBI').224Diana Sousadpavot2023-11-29Developing
Epistemic_Statements The goal of this work is to identify epistemic statements in the scientific literature. An epistemic statement is a statement of unknowns, hypotheses, speculations, uncertainties, including statements of claims, hypotheses, questions, explanations, future opportunities, surprises, issues, or concerns within a sentence. The unit of an epistemic statement is a sentence automatically parsed. The classification is binary - epistemic statement or not. We will label epistemic statements only and one can assume that if a statement is not labeled, then it is not an epistemic statement. The classifier is a CRF, trained on gold standard annotations of epistemic statements that are currently ongoing. We report an F-measure of 0.91 after 5-fold cross validation on a test set with 914 statements and an F-measure of 0.9 on a held out document with 130 statements. This project is still under development and is submitted to be used for the CovidLit project and associated Hackathon. Please contact Mayla if you have any questions.1.42 Mmboguslav2023-11-24Developing
example-dialog 0Jin-Dong Kim2023-11-27Testing
excludesZoonoses 25AikoHIRAKI2023-11-29Developing
FSU-PRGE A new broad-coverage corpus composed of 3,306 MEDLINE abstracts dealing with gene and protein mentions. The annotation process was semi-automatic. Publication: http://aclweb.org/anthology/W/W10/W10-1838.pdf59.5 KCALBC ProjectYue Wang2023-11-26Released
funRiceGenes-all 1.51 KPubDictionariesYue Wang2023-11-29Developing
funRiceGenes-exact 841Yue Wang2023-11-28Developing
geneset_names 0alo332022-04-26Released
Name T# Ann.AuthorMaintainerUpdated_atStatus

41-60 / 238 show all
CORD-19-Sentences 13.4 MJin-Dong Kim2023-11-24Testing
CORD-PICO 69.6 KSimon Susterssuster2023-11-27Developing
Covid19_manual_annotation_v2 4.58 KAikoHIRAKI2023-11-24Developing
craft-sa-dev 490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
demo4TogoSite 323AikoHIRAKI2023-11-26Developing
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
DisGeNet-2017-sample 2.93 KJin-Dong Kim2023-11-29Testing
DisGeNET5_gene_disease 2.04 MIBI GroupYue Wang2023-11-24Released
DisGeNET5_variant_disease 144 KIBI GroupYue Wang2023-11-24Released
EDAM-DFO 12.5 KJin-Dong Kim2023-11-29Testing
EDAM-topics 11.6 KJin-Dong Kim2023-11-29Testing
ENG_NER_NEL 493LASIGE-DeSTpruas_182023-11-26Developing
ENG_RE 224Diana Sousadpavot2023-11-29Developing
Epistemic_Statements 1.42 Mmboguslav2023-11-24Developing
example-dialog 0Jin-Dong Kim2023-11-27Testing
excludesZoonoses 25AikoHIRAKI2023-11-29Developing
FSU-PRGE 59.5 KCALBC ProjectYue Wang2023-11-26Released
funRiceGenes-all 1.51 KPubDictionariesYue Wang2023-11-29Developing
funRiceGenes-exact 841Yue Wang2023-11-28Developing
geneset_names 0alo332022-04-26Released