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NameTDescription# Ann.Author MaintainerUpdated_atStatus

1-20 / 238 show all
pubtator-sample Sample annotation of PubTator produced by Zhiyong Lu et al.28Zhiyong LuJin-Dong Kim2023-11-27Testing
Test_economics test1YongHwanKimkimyonghwan2023-11-29Testing
craft-sa-dev Development data for CRAFT SA shared task. This project contains the development (training) annotations for the Structural Annotation task of the CRAFT Shared Task 2019. This particular set contains token and sentence annotations with tokens linked via dependency relations. These dependency relations were automatically generated using the manually curated CRAFT constituency treebank files as input.490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
PubmedHPO Human phenotype annotation to PubMed abstracts, based on the HPO ontology12.4 MTudor Grozatudor2023-11-24Beta
GlycoBiology-GDGDB GDGDB-based annotation to GlycoBiology abstracts 2.46 KToshihide Shikanaishikanai2023-11-29Testing
GlycoBiology-PACDB cGGDB-based annotation to GlycoBiology abstracts3.03 KToshihide Shikanaishikanai2023-11-27Testing
GlycoBiology-cGGDB cGGDB-based annotation to GlycoBiology abstracts36Toshihide Shikanaishikanai2023-11-28Testing
sonoma2 sonoma29.09 KStandigmchanung2023-11-29Beta
sonoma _19.3 KStandigm2023-11-24Testing
CORD-PICO Automatic annotation of the CORD-19 dataset with PICO categories. The corpus was automatically labeled with an LSTM-CRF model trained on human-annotated PubMed abstracts from https://github.com/bepnye/EBM-NLP. Currently, titles and abstracts only are annotated using Population, Intervention and Outcome labels, as well as more fine-grained labels such as Age, Drug, Mortality and others.69.6 KSimon Susterssuster2023-11-27Developing
GlycoBiology-Epitope GlycoEpitope-based annotation to GlycoBiology abstracts3.18 KShujiro Okudashuo502023-11-29Testing
AlvisNLP-Async-Test Test for the asynchronous AlvisNLP/ML annotator family.0Robert Bossyrbossy2023-11-26Testing
PubTator4TogoVar 198 KPubTatorYasunori Yamamoto2024-01-10Developing
funRiceGenes-all 1.51 KPubDictionariesYue Wang2023-11-29Developing
OryzaGP_2021 Updating OryzaGP1.08 MPierre Larmandelarmande2023-11-28Developing
DisGeNET Disease-Gene association annotation.3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
bionlp-st-ge-2016-reference-tees NER and event extraction produced by TEES (with the default GE11 model) for the 20 full papers used in the BioNLP 2016 GE task reference corpus.14.6 KNico Colic Nico Colic2023-11-29Released
bionlp-st-ge-2016-test-tees NER and event extraction produced by TEES (with the default GE11 model) for the 14 full papers used in the BioNLP 2016 GE task test corpus.9.17 KNico ColicNico Colic2023-11-29Released
spacy-test Random set of articles used for testing in the development of the RESTful spaCy parsing web service. Since development is now finished, they are released for the community to use.131 KNico ColicNico Colic2023-11-29Released
bionlp-st-ge-2016-spacy-parsed Dependency parses produced by spaCy parser, and part-of-speech tags produced by Stanford tagger (with the wsj-0-18-left3words-nodistsim model). The exact procedure is described here. Data set contains the 34 full paper articles used in the BioNLP 2016 GE task. 225 KNico ColicNico Colic2023-11-29Released
NameT# Ann.Author MaintainerUpdated_atStatus

1-20 / 238 show all
pubtator-sample 28Zhiyong LuJin-Dong Kim2023-11-27Testing
Test_economics 1YongHwanKimkimyonghwan2023-11-29Testing
craft-sa-dev 490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
PubmedHPO 12.4 MTudor Grozatudor2023-11-24Beta
GlycoBiology-GDGDB 2.46 KToshihide Shikanaishikanai2023-11-29Testing
GlycoBiology-PACDB 3.03 KToshihide Shikanaishikanai2023-11-27Testing
GlycoBiology-cGGDB 36Toshihide Shikanaishikanai2023-11-28Testing
sonoma2 9.09 KStandigmchanung2023-11-29Beta
sonoma 19.3 KStandigm2023-11-24Testing
CORD-PICO 69.6 KSimon Susterssuster2023-11-27Developing
GlycoBiology-Epitope 3.18 KShujiro Okudashuo502023-11-29Testing
AlvisNLP-Async-Test 0Robert Bossyrbossy2023-11-26Testing
PubTator4TogoVar 198 KPubTatorYasunori Yamamoto2024-01-10Developing
funRiceGenes-all 1.51 KPubDictionariesYue Wang2023-11-29Developing
OryzaGP_2021 1.08 MPierre Larmandelarmande2023-11-28Developing
DisGeNET 3.12 MNuria Queralt Jin-Dong Kim2023-11-24Beta
bionlp-st-ge-2016-reference-tees 14.6 KNico Colic Nico Colic2023-11-29Released
bionlp-st-ge-2016-test-tees 9.17 KNico ColicNico Colic2023-11-29Released
spacy-test 131 KNico ColicNico Colic2023-11-29Released
bionlp-st-ge-2016-spacy-parsed 225 KNico ColicNico Colic2023-11-29Released