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Name TDescription# Ann.AuthorMaintainerUpdated_atStatus

221-240 / 316 show all
PMA_Manual Manually annotated examples of medical device PMA approval statements204Stefano Rensitherightstef2023-11-27Developing
PMA_MER PMAs annotated using MERpy.58.9 KStefano Rensitherightstef2023-11-29Developing
PMC-KEGG Documents from PMC including the word KEGG, with names of software tools and databases marked. 27yucca2023-11-28Developing
pqqtest_sentence 565 Kyaoxinzhi2023-11-29Testing
proj_h_1 6.7 K2023-11-24
PT_NER_NEL_CONSENSUS 354dpavot2023-11-27
PT_NER_NEL_Diana 318dpavot2023-11-24Developing
PT_NER_NEL_mabarros 328mabarros2023-11-30Developing
PT_NER_NEL_pruas 334Pedro Ruaspruas_182023-11-30Uploading
pubmed-sentences-benchmark A benchmark data for text segmentation into sentences. The source of annotation is the GENIA treebank v1.0. Following is the process taken. began with the GENIA treebank v1.0. sentence annotations were extracted and converted to PubAnnotation JSON. uploaded. 12 abstracts met alignment failure. among the 12 failure cases, 4 had a dot('.') character where there should be colon (':'). They were manually fixed then successfully uploaded: 7903907, 8053950, 8508358, 9415639. among the 12 failed abstracts, 8 were "250 word truncation" cases. They were manually fixed and successfully uploaded. During the fixing, manual annotations were added for the missing pieces of text. 30 abstracts had extra text in the end, indicating copyright statement, e.g., "Copyright 1998 Academic Press." They were annotated as a sentence in GTB. However, the text did not exist anymore in PubMed. Therefore, the extra texts were removed, together with the sentence annotation to them. 18.4 KGENIA projectJin-Dong Kim2023-11-28Released
PubMed_Structured_Abstracts Sections (zones) as retrieved from PubMed.131 Kzebet2023-11-28Released
pubmed_test 02023-11-29
QFMC_MEDLINE Quaero French Medical Corpus: Annotation of MEDLINE titles5.9 KAurélie NévéolPierre Zweigenbaum2023-11-29Beta
RDoCTask1SampleData Each annotation file contains an annotated abstract with an RDoC category. Each title span in these sample data is annotated with the corresponding related RDoC construct, although the RDoC category would apply for the entire abstract. The annotation data are formatted as json files. Please refer to the following page for a more detailed description of the json format http://www.pubannotation.org/docs/annotation-format/.20mmanani1s2023-11-29Released
RDoCTask2SampleData Each annotation file contains an annotated abstract with the most relevant sentence. The relevant sentence is annotated with the RDoC category name. The annotation data are formatted as json files. Please refer to the following page for a more detailed description of the json format http://www.pubannotation.org/docs/annotation-format/. 10mmanani1s2023-11-29Released
RELASIGEBLAH7hhaider5 277hhaider52023-11-29Developing
RELISH-DB Abstracts contained in the data of the RELISH-DB (https://relishdb.ict.griffith.edu.au) made available for download here. Data was downloaded from here: https://figshare.com/projects/RELISH-DB/60095 Related publication: https://academic.oup.com/database/article/doi/10.1093/database/baz085/5608006#20072202302023-11-29Released
SCAI-Test A small corpus for the evaluation of dictionaries containing chemical entities. Publication: http://www.scai.fraunhofer.de/fileadmin/images/bio/data_mining/paper/kolarik2008.pdf Original source: https://www.scai.fraunhofer.de/en/business-research-areas/bioinformatics/downloads/corpora-for-chemical-entity-recognition.html1.21 KCALBC ProjectYue Wang2023-11-28Released
semrep-sample Sample annotation of SemRep, produced by Rindflesch, et al. Rindflesch, T.C. and Fiszman, M. (2003). The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. Journal of Biomedical Informatics, 36(6):462-477.11.1 KRindflesch et al.Jin-Dong Kim2023-11-29Testing
silkwormbase 10 Ksakaniwa2023-11-29Testing
Name T# Ann.AuthorMaintainerUpdated_atStatus

221-240 / 316 show all
PMA_Manual 204Stefano Rensitherightstef2023-11-27Developing
PMA_MER 58.9 KStefano Rensitherightstef2023-11-29Developing
PMC-KEGG 27yucca2023-11-28Developing
pqqtest_sentence 565 Kyaoxinzhi2023-11-29Testing
proj_h_1 6.7 K2023-11-24
PT_NER_NEL_CONSENSUS 354dpavot2023-11-27
PT_NER_NEL_Diana 318dpavot2023-11-24Developing
PT_NER_NEL_mabarros 328mabarros2023-11-30Developing
PT_NER_NEL_pruas 334Pedro Ruaspruas_182023-11-30Uploading
pubmed-sentences-benchmark 18.4 KGENIA projectJin-Dong Kim2023-11-28Released
PubMed_Structured_Abstracts 131 Kzebet2023-11-28Released
pubmed_test 02023-11-29
QFMC_MEDLINE 5.9 KAurélie NévéolPierre Zweigenbaum2023-11-29Beta
RDoCTask1SampleData 20mmanani1s2023-11-29Released
RDoCTask2SampleData 10mmanani1s2023-11-29Released
RELASIGEBLAH7hhaider5 277hhaider52023-11-29Developing
RELISH-DB 02023-11-29Released
SCAI-Test 1.21 KCALBC ProjectYue Wang2023-11-28Released
semrep-sample 11.1 KRindflesch et al.Jin-Dong Kim2023-11-29Testing
silkwormbase 10 Ksakaniwa2023-11-29Testing