SeeDev-binary@ldeleger:SeeDev-binary-21635767-1 JSONTXT

{"target":"http://pubannotation.org/docs/sourcedb/SeeDev-binary@ldeleger/sourceid/SeeDev-binary-21635767-1","sourcedb":"SeeDev-binary@ldeleger","sourceid":"SeeDev-binary-21635767-1","text":"We identified gene coexpression networks in the transcriptome of developing Arabidopsis\n(Arabidopsis thaliana) seeds from the globular to mature embryo stages by analyzing publicly accessible\nmicroarray datasets. Genes encoding the known enzymes in the fatty acid biosynthesis\npathway were found in one coexpression subnetwork (or cluster), while genes encoding\noleosins and seed storage proteins were identified in another subnetwork with a distinct\nexpression profile. In the triacylglycerol assembly pathway, only the genes encoding\ndiacylglycerol acyltransferase 1 (DGAT1) and a putative cytosolic \"type 3\" DGAT exhibited\na similar expression pattern with genes encoding oleosins. We also detected a large\nnumber of putative cis-acting regulatory elements in the promoter regions of these genes, and promoter motifs\nfor LEC1 (LEAFY COTYLEDON 1), DOF (DNA-binding-with-One-Finger), GATA, and MYB transcription\nfactors (TF), as well as SORLIP5 (Sequences Over-Represented in Light-Induced Promoters\n5), are overrepresented in the promoter regions of fatty acid biosynthetic genes.\nThe conserved CCAAT motifs for B3-domain TFs and binding sites for bZIP (basic-leucine\nzipper) TFs are enriched in the promoters of genes encoding oleosins and seed 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