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OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 87-92 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T2 149-153 http://identifiers.org/oryzabase.gene/863 denotes Sub1
T3 323-328 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T4 333-338 http://identifiers.org/oryzabase.gene/7119 denotes SUB1C
T5 395-399 http://identifiers.org/oryzabase.gene/863 denotes Sub1
T6 468-473 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T7 502-507 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T8 589-593 http://identifiers.org/oryzabase.gene/863 denotes Sub1
T9 605-610 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T10 613-618 http://identifiers.org/oryzabase.gene/7119 denotes SUB1C
T11 658-663 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T12 722-727 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T13 806-811 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T14 841-843 http://identifiers.org/oryzabase.gene/319 denotes RT
T15 1011-1016 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T16 1124-1129 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T17 1374-1379 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T18 1501-1506 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T19 1723-1728 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T58391 333-338 http://identifiers.org/rapdb.locus/Os09g0286600 denotes SUB1C
T71925 613-618 http://identifiers.org/rapdb.locus/Os09g0286600 denotes SUB1C

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 60-81 http://identifiers.org/oryzabase.gene/2474 denotes submergence-tolerance
T2 87-92 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T3 149-153 http://identifiers.org/oryzabase.gene/863 denotes Sub1
T4 323-328 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T5 333-338 http://identifiers.org/oryzabase.gene/7119 denotes SUB1C
T6 395-399 http://identifiers.org/oryzabase.gene/863 denotes Sub1
T7 468-473 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T8 502-507 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T9 589-593 http://identifiers.org/oryzabase.gene/863 denotes Sub1
T10 605-610 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T11 613-618 http://identifiers.org/oryzabase.gene/7119 denotes SUB1C
T12 658-663 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T13 722-727 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T14 806-811 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T15 841-843 http://identifiers.org/oryzabase.gene/319 denotes RT
T16 1011-1016 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T17 1124-1129 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T18 1374-1379 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T19 1501-1506 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T20 1723-1728 http://identifiers.org/oryzabase.gene/7115 denotes SUB1A
T30474 149-153 http://identifiers.org/ricegap/LOC_Os01g17160 denotes Sub1
T65247 333-338 http://identifiers.org/ricegap/LOC_Os09g11460 denotes SUB1C
T87643 395-399 http://identifiers.org/ricegap/LOC_Os01g17160 denotes Sub1
T30689 589-593 http://identifiers.org/ricegap/LOC_Os01g17160 denotes Sub1
T60026 613-618 http://identifiers.org/ricegap/LOC_Os09g11460 denotes SUB1C
T21978 149-153 http://identifiers.org/rapdb.locus/Os01g0279000 denotes Sub1
T79720 333-338 http://identifiers.org/rapdb.locus/Os09g0286600 denotes SUB1C
T94532 395-399 http://identifiers.org/rapdb.locus/Os01g0279000 denotes Sub1
T79616 589-593 http://identifiers.org/rapdb.locus/Os01g0279000 denotes Sub1
T47597 613-618 http://identifiers.org/rapdb.locus/Os09g0286600 denotes SUB1C
T31685 333-338 http://identifiers.org/uniprot/B1PI84 denotes SUB1C
T30124 613-618 http://identifiers.org/uniprot/B1PI84 denotes SUB1C
M_0 87-92 hunflair:NA:Gene denotes SUB1A
M_1 323-328 hunflair:NA:Gene denotes SUB1A
M_2 468-473 hunflair:NA:Gene denotes SUB1A
M_3 502-507 hunflair:NA:Gene denotes SUB1A
M_4 605-610 hunflair:NA:Gene denotes SUB1A
M_5 658-663 hunflair:NA:Gene denotes SUB1A
M_6 722-727 hunflair:NA:Gene denotes SUB1A
M_7 806-811 hunflair:NA:Gene denotes SUB1A
M_8 1011-1016 hunflair:NA:Gene denotes SUB1A
M_9 1124-1129 hunflair:NA:Gene denotes SUB1A
M_10 1374-1379 hunflair:NA:Gene denotes SUB1A
M_11 1501-1506 hunflair:NA:Gene denotes SUB1A
M_12 1723-1728 hunflair:NA:Gene denotes SUB1A
M_13 55-59 hunflair:NA:Species denotes rice
M_14 104-108 hunflair:NA:Species denotes rice
M_15 1673-1677 hunflair:NA:Species denotes rice
M_16 502-509 hunflair:NA:Gene denotes SUB1A-2
M_17 722-729 hunflair:NA:Gene denotes SUB1A-2
M_18 1374-1381 hunflair:NA:Gene denotes SUB1A-2
M_19 605-612 hunflair:NA:Gene denotes SUB1A-1
M_20 806-813 hunflair:NA:Gene denotes SUB1A-1
M_21 1501-1508 hunflair:NA:Gene denotes SUB1A-1
M_22 1458-1461 hunflair:NA:Gene denotes GUS
M_23 1553-1556 hunflair:NA:Gene denotes GUS
M_24 333-338 hunflair:NA:Gene denotes SUB1C
M_25 613-618 hunflair:NA:Gene denotes SUB1C
M_26 613-620 hunflair:NA:Gene denotes SUB1C-1
M_27 149-153 hunflair:NA:Gene denotes Sub1
M_28 395-399 hunflair:NA:Gene denotes Sub1
M_29 589-593 hunflair:NA:Gene denotes Sub1

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 1592-1598 funRiceGene:331 denotes sheath
M_1 163-172 funRiceGene:214 denotes tolerance
M_2 1186-1195 funRiceGene:214 denotes tolerance
M_3 1319-1328 funRiceGene:214 denotes tolerance
M_4 958-970 xzyao:1080 denotes leaf samples
M_5 1587-1598 xzyao:3283 denotes leaf sheath
M_6 1458-1470 xzyao:12335 denotes GUS reporter
M_7 958-962 PO:0025034, funRiceGene:469 denotes leaf
M_8 1587-1591 PO:0025034, funRiceGene:469 denotes leaf
M_9 1610-1614 PO:0025034, funRiceGene:469 denotes leaf
M_10 1744-1748 PO:0025034, funRiceGene:469 denotes leaf
M_11 267-276 PECO:0007353 denotes germplasm
M_12 1610-1621 PO:0006012 denotes leaf collar
M_13 1744-1759 xzyao:17594 denotes leaf elongation
M_14 703-712 xzyao:5042 denotes James Wee
M_15 1587-1598 PO:0020104, xzyao:16507 denotes leaf sheath
M_16 134-145 funRiceGene:101 denotes Submergence
M_17 176-187 funRiceGene:101 denotes submergence
M_18 613-620 hunflair:NA:Gene denotes SUB1C-1
M_19 1458-1461 hunflair:NA:Gene denotes GUS
M_20 1553-1556 hunflair:NA:Gene denotes GUS
M_21 502-509 hunflair:NA:Gene denotes SUB1A-2
M_22 722-729 hunflair:NA:Gene denotes SUB1A-2
M_23 1374-1381 hunflair:NA:Gene denotes SUB1A-2
M_24 55-59 hunflair:NA:Species denotes rice
M_25 104-108 hunflair:NA:Species denotes rice
M_26 1673-1677 hunflair:NA:Species denotes rice
M_27 149-153 hunflair:NA:Gene denotes Sub1
M_28 395-399 hunflair:NA:Gene denotes Sub1
M_29 589-593 hunflair:NA:Gene denotes Sub1
M_30 605-612 hunflair:NA:Gene denotes SUB1A-1
M_31 806-813 hunflair:NA:Gene denotes SUB1A-1
M_32 1501-1508 hunflair:NA:Gene denotes SUB1A-1
M_33 333-338 hunflair:NA:Gene denotes SUB1C
M_34 613-618 hunflair:NA:Gene denotes SUB1C
M_35 87-92 hunflair:NA:Gene denotes SUB1A
M_36 323-328 hunflair:NA:Gene denotes SUB1A
M_37 468-473 hunflair:NA:Gene denotes SUB1A
M_38 502-507 hunflair:NA:Gene denotes SUB1A
M_39 605-610 hunflair:NA:Gene denotes SUB1A
M_40 658-663 hunflair:NA:Gene denotes SUB1A
M_41 722-727 hunflair:NA:Gene denotes SUB1A
M_42 806-811 hunflair:NA:Gene denotes SUB1A
M_43 1011-1016 hunflair:NA:Gene denotes SUB1A
M_44 1124-1129 hunflair:NA:Gene denotes SUB1A
M_45 1374-1379 hunflair:NA:Gene denotes SUB1A
M_46 1501-1506 hunflair:NA:Gene denotes SUB1A
M_47 1723-1728 hunflair:NA:Gene denotes SUB1A
M_48 55-59 pubtator:4530:Species denotes rice
M_49 104-108 pubtator:4530:Species denotes rice
M_50 1673-1677 pubtator:4530:Species denotes rice

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 60-81 http://identifiers.org/oryzabase.gene/2474 denotes submergence-tolerance
T2 146-147 http://identifiers.org/oryzabase.gene/11216 denotes 1
T3 611-612 http://identifiers.org/oryzabase.gene/11216 denotes 1
T4 619-620 http://identifiers.org/oryzabase.gene/11216 denotes 1
T5 812-813 http://identifiers.org/oryzabase.gene/11216 denotes 1
T6 1507-1508 http://identifiers.org/oryzabase.gene/11216 denotes 1

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 219-232 cand:PECO:0007125-genetic environment denotes novel sources
M_1 219-232 cand:PPO:0002300-plant structures present denotes novel sources
M_2 219-232 cand:WTO:0000096-nutrient use efficiency denotes novel sources
M_3 219-232 cand:PO:0025571-multi-tissue plant structure development stage denotes novel sources
M_4 219-232 cand:PECO:0007043-non-mineral nutrient exposure denotes novel sources
M_5 219-232 cand:PECO:0001044-limited carbon exposure denotes novel sources
M_6 219-232 cand:TO:0000059-node color denotes novel sources
M_7 219-232 cand:PO:0025118-anther pore denotes novel sources
M_8 219-232 cand:PPO:0000003-lower percent denotes novel sources
M_9 219-232 cand:WTO:0000203-water stress denotes novel sources
M_10 219-232 cand:PO:0025055-tuber cortex denotes novel sources
M_11 1744-1759 cand:TO:0000360-leaf elongation rate denotes leaf elongation
M_12 1744-1759 cand:PO:0025361-leaf tendril denotes leaf elongation
M_13 1744-1759 cand:PO:0009023-leaf axil denotes leaf elongation
M_14 1744-1759 cand:PO:0025259-leaf procambium denotes leaf elongation
M_15 1744-1759 cand:TO:0000135-leaf length denotes leaf elongation
M_16 1744-1759 cand:PO:0020139-leaf midvein denotes leaf elongation
M_17 1744-1759 cand:TO:0000541-leaf position denotes leaf elongation
M_18 1744-1759 cand:funRiceGene:227-cell elongation denotes leaf elongation
M_19 1744-1759 cand:TO:0006036-stem elongation denotes leaf elongation
M_20 1744-1759 cand:funRiceGene:460-root elongation denotes leaf elongation
M_21 333-338 GeneID:RAPID:Os09g0286600MSUID:LOC_Os09g11460 denotes SUB1C
M_22 1723-1728 GeneID:NA denotes SUB1A
T95426 1610-1621 PO:0006012 denotes leaf collar
T53050 1587-1598 PO:0020104, xzyao:22679 denotes leaf sheath
T55138 267-276 PECO:0007353 denotes germplasm
T49637 1553-1567 xzyao:9707 denotes GUS expression
T96256 1544-1567 xzyao:12912 denotes specific GUS expression
T69370 1053-1098 xzyao:28658 denotes Temporal and spatial gene expression analyses
T52264 958-962 PO:0025034, funRiceGene:469 denotes leaf
T43378 1587-1591 PO:0025034, funRiceGene:469 denotes leaf
T84062 1610-1614 PO:0025034, funRiceGene:469 denotes leaf
T65290 1744-1748 PO:0025034, funRiceGene:469 denotes leaf
T91541 1673-1684 xzyao:35993 denotes rice leaves
T65369 695-712 xzyao:38788 denotes variety James Wee
T57200 122-127 WTO:0000006 denotes trait
T65476 1482-1493 xzyao:15868 denotes the control
T88089 958-970 xzyao:17468 denotes leaf samples
T41216 1744-1759 xzyao:27809 denotes leaf elongation
T293 60-71 funRiceGene:101 denotes submergence
T28635 134-145 funRiceGene:101 denotes Submergence
T58574 176-187 funRiceGene:101 denotes submergence
T12767 1766-1777 funRiceGene:101 denotes submergence
T40042 844-856 xzyao:5910 denotes PCR analyses
T53631 1592-1598 funRiceGene:331 denotes sheath
T52899 1351-1366 xzyao:17753 denotes high expression
M_23 72-81 funRiceGene:214 denotes tolerance
M_24 163-172 funRiceGene:214 denotes tolerance
M_25 236-245 funRiceGene:214 denotes tolerance
M_26 1042-1051 funRiceGene:214 denotes tolerance
M_27 1186-1195 funRiceGene:214 denotes tolerance
M_28 1319-1328 funRiceGene:214 denotes tolerance
M_29 1458-1461 hunflair:NA:Gene denotes GUS
M_30 1553-1556 hunflair:NA:Gene denotes GUS
M_31 613-620 hunflair:NA:Gene denotes SUB1C-1
M_32 605-612 hunflair:NA:Gene denotes SUB1A-1
M_33 806-813 hunflair:NA:Gene denotes SUB1A-1
M_34 1501-1508 hunflair:NA:Gene denotes SUB1A-1
M_35 55-59 hunflair:NA:Species denotes rice
M_36 104-108 hunflair:NA:Species denotes rice
M_37 1673-1677 hunflair:NA:Species denotes rice
M_38 333-338 hunflair:NA:Gene denotes SUB1C
M_39 613-618 hunflair:NA:Gene denotes SUB1C
M_40 502-509 hunflair:NA:Gene denotes SUB1A-2
M_41 722-729 hunflair:NA:Gene denotes SUB1A-2
M_42 1374-1381 hunflair:NA:Gene denotes SUB1A-2
M_43 87-92 hunflair:NA:Gene denotes SUB1A
M_44 323-328 hunflair:NA:Gene denotes SUB1A
M_45 468-473 hunflair:NA:Gene denotes SUB1A
M_46 502-507 hunflair:NA:Gene denotes SUB1A
M_47 605-610 hunflair:NA:Gene denotes SUB1A
M_48 658-663 hunflair:NA:Gene denotes SUB1A
M_49 722-727 hunflair:NA:Gene denotes SUB1A
M_50 806-811 hunflair:NA:Gene denotes SUB1A
M_51 1011-1016 hunflair:NA:Gene denotes SUB1A
M_52 1124-1129 hunflair:NA:Gene denotes SUB1A
M_53 1374-1379 hunflair:NA:Gene denotes SUB1A
M_54 1501-1506 hunflair:NA:Gene denotes SUB1A
M_55 1723-1728 hunflair:NA:Gene denotes SUB1A
M_56 149-153 hunflair:NA:Gene denotes Sub1
M_57 395-399 hunflair:NA:Gene denotes Sub1
M_58 589-593 hunflair:NA:Gene denotes Sub1
M_59 55-59 pubtator:4530:Species denotes rice
M_60 104-108 pubtator:4530:Species denotes rice
M_61 1673-1677 pubtator:4530:Species denotes rice

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_16 502-509 hunflair:NA:Gene denotes SUB1A-2
M_0 87-92 hunflair:NA:Gene denotes SUB1A
M_1 323-328 hunflair:NA:Gene denotes SUB1A
M_2 468-473 hunflair:NA:Gene denotes SUB1A
M_3 502-507 hunflair:NA:Gene denotes SUB1A
M_4 605-610 hunflair:NA:Gene denotes SUB1A
M_5 658-663 hunflair:NA:Gene denotes SUB1A
M_6 722-727 hunflair:NA:Gene denotes SUB1A
M_7 806-811 hunflair:NA:Gene denotes SUB1A
M_8 1011-1016 hunflair:NA:Gene denotes SUB1A
M_9 1124-1129 hunflair:NA:Gene denotes SUB1A
M_10 1374-1379 hunflair:NA:Gene denotes SUB1A
M_11 1501-1506 hunflair:NA:Gene denotes SUB1A
M_12 1723-1728 hunflair:NA:Gene denotes SUB1A
M_13 55-59 hunflair:NA:Species denotes rice
M_14 104-108 hunflair:NA:Species denotes rice
M_15 1673-1677 hunflair:NA:Species denotes rice
M_17 722-729 hunflair:NA:Gene denotes SUB1A-2
M_18 1374-1381 hunflair:NA:Gene denotes SUB1A-2
M_19 605-612 hunflair:NA:Gene denotes SUB1A-1
M_20 806-813 hunflair:NA:Gene denotes SUB1A-1
M_21 1501-1508 hunflair:NA:Gene denotes SUB1A-1
M_22 1458-1461 hunflair:NA:Gene denotes GUS
M_23 1553-1556 hunflair:NA:Gene denotes GUS
M_24 333-338 hunflair:NA:Gene denotes SUB1C
M_25 613-618 hunflair:NA:Gene denotes SUB1C
M_26 613-620 hunflair:NA:Gene denotes SUB1C-1
M_27 149-153 hunflair:NA:Gene denotes Sub1
M_28 395-399 hunflair:NA:Gene denotes Sub1
M_29 589-593 hunflair:NA:Gene denotes Sub1

Allie

Id Subject Object Predicate Lexical cue
SS1_20652530_1_0 134-147 expanded denotes Submergence 1
SS2_20652530_1_0 149-153 abbr denotes Sub1
AE1_20652530_1_0 SS1_20652530_1_0 SS2_20652530_1_0 abbreviatedTo Submergence 1,Sub1

OryzaGP

Id Subject Object Predicate Lexical cue
T1 60-81 gene denotes submergence-tolerance
T2 604-612 gene denotes (SUB1A-1
T3 806-813 gene denotes SUB1A-1
T4 1501-1508 gene denotes SUB1A-1