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div. section text # proj. length # Ann.
0 TIAB The Complete Sequence of the Mitochondrial Genome ofButomus umbellatus- A Member of an Early Branchi 1 1597 0 show
1 Introduction The mitochondrial genomes of embryophytes or land plants are renowned among eukaryotes for their ast 1 3648 0 show
2 Materials and Methods Mitochondrial Genome Sequencing Fresh plant material was collected from a single individual (voucher 1 1443 0 show
3 Materials and Methods Sequence Assembly A total of 87,048 sequences (average size 207 nt) were assembled in Newbler 2.3 (4 1 1193 0 show
4 Materials and Methods Sequence Analyses Coding regions were identified by BLASTX searches performed against a local databa 1 1486 0 show
5 Materials and Methods Phylogenetic Analyses Sequences of 24 mitochondrial genes from Butomus and 25 seed plant species, fo 1 1635 0 show
6 Results and Discussion The Mitochondrial Genome of Butomus A total of 63,056 individual sequences, corresponding to 72% of 1 3130 0 show
7 Results and Discussion Plastid DNA Insertions The mitochondrial genome of vascular plants is known to import fragments of D 1 1837 0 show
8 Results and Discussion Nuclear DNA Insertions The mitochondrial genome may also integrate DNA from the nuclear genome [4], 1 2070 0 show
9 Results and Discussion Protein Coding Genes The mitochondrial genome of Butomus contains 28 protein coding genes (Table 2, 1 3186 0 show
10 Results and Discussion rRNA Genes The mitochondrial genome of Butomus includes three rRNA genes (5S, 18S, and 26S rRNA gene 1 1528 0 show
11 Results and Discussion tRNA Genes None of the angiosperm mitochondrial genomes sequenced to date has included a full set of 1 2815 0 show
12 Results and Discussion Introns In Butomus we found a total of 21 group II introns distributed among seven protein coding ge 1 2407 0 show
13 Results and Discussion Repetitive Sequences Repetitive sequences, often of considerable length, are common in plant mitocho 1 1598 0 show
14 Results and Discussion RNA Editing In all land plants (Embryophytes), except marchantiid liverworts, transcripts of the mit 1 2963 0 show
15 Results and Discussion Phylogeny and Substitution Rates As expected, a phylogenetic analysis of 24 protein coding genes fro 1 1890 0 show
16 Results and Discussion Perspectives The number of complete plant mitochondrial genomes is growing rather slowly, primarily 1 2157 0 show
17 Caption-Table 1 Comparison of complete mitochondrial genomes of selected seed plants. 1 69 0 show
18 Caption-Table 2 Gene content of the mitochondrial genome of Butomus umbellatus. 1 63 0 show
19 Caption-Figure 1 Circular map of the mitochondrial genome of Butomus umbellatus. Known protein coding, rRNA, and tRNA 1 561 0 show
20 Caption-Figure 2 Gene content in selected seed plant mitochondrial genomes. Dark squares indicate presence of assumed 1 362 0 show
21 Caption-Figure 3 Phylogeny of 26 seed plants inferred from 24 protein coding mitochondrial genes. Phylogenetic tree b 1 185 0 show
22 Caption-Figure 4 Phylogenetic analysis of substitution rates in three mitochondrial rRNA genes. Analyses are based on 1 341 0 show
23 Caption-Table 3 Sequences of plastid origin in mitochondrial genome of Butomus umbellatus. 1 74 0 show
24 Caption-Table 4 Long repeats in the mitochondrial genome of Butomus umbellatum. 1 63 0 show