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Divisions (17) JSON TSV

div. section text # proj. length # Ann.
0 TIAB Comparative Genomic Analysis of the GenusNocardiopsisProvides New Insights into Its Genetic Mechanis 1 1690 0 show
1 Introduction The genus Nocardiopsis is affiliated with the phylum Actinobacteria, which is marked by being Gram-p 1 3374 0 show
2 Results and Discussion Genomic Features Together with N. dassonvillei subsp. dassonvillei DSM 43111T, the 17 type strains s 1 1411 0 show
3 Results and Discussion Core and Pan-genome Analysis Using the reciprocal best hit method, 99,684 protein coding sequences b 1 5068 0 show
4 Results and Discussion Functional Classification of Homologous Clusters To understand the functions of the homologous clust 1 4466 0 show
5 Results and Discussion Phylogenomic Analysis We reconstructed a phylogenetic tree based on a super-matrix of amino acid seq 1 8138 0 show
6 Results and Discussion Conclusions Nocardiopsis is a group of widely-distributed actinobacteria that can populate quite var 1 1940 0 show
7 Materials and Methods Genome Sequencing Sixteen genomes of the type strains of Nocardiopsis, including N. alba DSM 43377T 1 1252 0 show
8 Materials and Methods Core and Pan-genome Analyses Protein-coding sequences were retrieved from the genome sequences. Gene 1 1356 0 show
9 Materials and Methods Functional Classification of Homologous Clusters Each core protein sequence in the 17 Nocardiopsis s 1 558 0 show
10 Materials and Methods Phylogenomic Analysis Based on the homologous protein identifications, we selected a set of single-c 1 1973 0 show
11 Caption-Figure 1 Occurrence of individual proteins in 17 Nocardiopsis proteomes ranged from one (a species-specific p 1 380 0 show
12 Caption-Figure 2 Nocardiopsis core, unique, and pan-genome evolution according to the number of sequenced genomes. Th 1 1501 0 show
13 Caption-Figure 3 Phylogenetic network of 17 species of Nocardiopsis. The phylogenetic network was constructed with Sp 1 266 0 show
14 Caption-Figure 4 Gene content dendrogram and distribution of lineage-specific gene clusters. A dendrogram constructed 1 769 0 show
15 Caption-Figure 5 Distribution of species-specific genes on the chromosome of Nocardiopsis dassonvillei subsp. dassonv 1 333 0 show
16 Caption-Table 1 Distribution of top ten functional categories among core paralogous proteins in 17 Nocardiopsis geno 1 104 0 show