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PMC:7455774 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 3947-3950 Body_part denotes lip http://purl.org/sig/ont/fma/fma59816

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 3947-3950 Body_part denotes lip http://purl.obolibrary.org/obo/UBERON_0001833

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 36-44 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 129-137 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T3 319-327 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 512-520 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 1479-1487 Disease denotes dementia http://purl.obolibrary.org/obo/MONDO_0001627
T6 1766-1774 Disease denotes dementia http://purl.obolibrary.org/obo/MONDO_0001627
T7 1961-1969 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 3847-3855 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 4211-4219 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T10 4401-4409 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T11 4943-4945 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 328-331 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T2 706-711 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T3 751-752 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 910-915 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T5 1044-1045 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 1432-1433 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 1933-1934 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 2102-2103 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 2125-2126 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 2844-2848 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T11 2949-2950 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 3000-3001 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 3455-3456 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 3589-3590 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 3666-3669 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T16 4282-4283 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 4365-4366 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 4691-4692 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 4858-4859 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T20 4946-4949 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T21 5040-5045 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T22 5062-5069 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 2137-2145 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888
T2 2743-2751 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888
T3 3515-3523 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888
T4 3627-3635 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888
T5 3932-3940 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888
T6 4142-4150 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888
T7 5144-5150 Chemical denotes formal http://purl.obolibrary.org/obo/CHEBI_48341

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 1479-1487 Phenotype denotes dementia http://purl.obolibrary.org/obo/HP_0000726
T2 1766-1774 Phenotype denotes dementia http://purl.obolibrary.org/obo/HP_0000726
T3 3355-3359 Phenotype denotes pain http://purl.obolibrary.org/obo/HP_0012531

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-98 Sentence denotes Sentenced to life: what the Italian COVID-19 pandemic could teach us (if we were willing to learn)
T2 100-318 Sentence denotes One of the saddest images of SARS-CoV-2 pandemic in Italy was the fleet of military trucks transporting the coffins of coronavirus victims out of Bergamo as the local crematoriums could no longer keep up with the dead.
T3 319-511 Sentence denotes COVID-19 has denied dignity to the dead: it isolated people from their loved ones right before they died, and then it did not allow any family or friends around while being buried or cremated.
T4 512-610 Sentence denotes SARS-CoV-2 pandemic hit Italy very hard, with 247,158 cases and 35,132 deaths as of July 30, 2020.
T5 611-797 Sentence denotes According to the International Long-Term Care Policy Network [1], up to 57% of deaths from the virus occurred at long-term care facilities, a number that might be largely underestimated.
T6 798-1063 Sentence denotes Besides some unavoidable strategic mistakes that were made due to the little experience in dealing with the new virus, the demographics and background disease in the population living in long-term care facilities in Italy have undoubtedly played a pivotal role [2].
T7 1064-1249 Sentence denotes As reported by the Italian Institute of Statistics, out of 382,634 residents in Italian long-term care facilities, 75.2% were older than 65 years and 57.1% were not self-sufficient [3].
T8 1250-1364 Sentence denotes Data of an epidemiological study [4] showed that the mean age of residents at the time of death was over 85 years.
T9 1365-1542 Sentence denotes 74% of deceased residents had more than two morbidities, more than a half (55.0%) were suffering from very severe dementia, with the worst cognitive status shortly before death.
T10 1543-1838 Sentence denotes Since the mean length of stay before death was very short (6 months), long-term care facilities are places where people go (are sent) to die when they are highly dependent because of end-stage multimorbidities and advanced dementia, without any chance of shared decision about their end of life.
T11 1839-1984 Sentence denotes This frail, multimorbid, severely cognitively impaired, non-self-sufficient population formed a very easy harvest for the SARS-CoV-2 to mow down.
T12 1985-2074 Sentence denotes Would this scenario had been the same if we cared more for quality than quantity of life?
T13 2075-2189 Sentence denotes Are we actually practicing a patient-centered and a narrative medicine approach when taking care of these persons?
T14 2190-2324 Sentence denotes When caring for the older patient’s health, do we see dignity, namely autonomy, identity, and worthiness, as the core value of health?
T15 2325-2541 Sentence denotes Lastly, can we honestly affirm that these patients would have not chosen to avoid medical cures aimed to lengthen life, had they better understood their medical choices and the tradeoffs they were going to deal with?
T16 2542-2895 Sentence denotes No clinician, no specialty, no patient is immune from this problem, whose causes are manifold: fee-for-service payment, paucity of strong clinical evidences, fear of liability and subsequent defensive medicine when dealing with patient and patients’ relatives, who believe that there’s always one more test, one more treatment, one more journey of hope.
T17 2896-3044 Sentence denotes End-of-life discussions in Italy are still too often a taboo subject, and public perception of death as a medical culpable failure is deeply rooted.
T18 3045-3231 Sentence denotes As difficult as it is, this topic needs to be addressed to manage medical treatments and to reduce overuse of medical services for older, frail patients with serious, chronic conditions.
T19 3232-3374 Sentence denotes Fostering and nurturing hope even at the end of life is significant, though it cannot translate to patients into increased pain and suffering.
T20 3375-3480 Sentence denotes In the Atlantic Monthly in January, 1957, an anonymous American wrote “There is a new way of dying today.
T21 3481-3714 Sentence denotes It is the slow passage via modern medicine. … If you are going to die, it can prevent you from so doing for a very long time” arguing that modern medicine “made dying … an ordeal which has somehow deprived death of its dignity.” [5].
T22 3715-4192 Sentence denotes If we want to restore dignity to death, cancel the 1957 Atlantic Monthly prophecy and never see again in Italy the tragic images of SARS-CoV-2 victims carried away by military trucks, we need to change the culture of medicine, stop lip service and effectively promote knowledge, training and access to palliative care, implement shared decision making and advanced care planning, and, overall, debunk the views of the power of medicine to prevent death as its foremost purpose.
T23 4193-4361 Sentence denotes Nowadays, whether SARS-CoV-2 is getting weaker and kills much less people than before is a matter of very heated debate among academic, prime time virologists in Italy.
T24 4362-4709 Sentence denotes As a hospitalist, I sadly believe that SARS-CoV-2 just killed the ones who were to die: the multimorbid, severely cognitively impaired, non-self-sufficient older patients that we had sentenced to life in long-term care facilities, enduring the dying process pursuing quantity of life in spite of quality of life and the right to a dignified death.
T25 4711-4727 Sentence denotes Publisher's Note
T26 4728-4846 Sentence denotes Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
T27 4848-4855 Sentence denotes Funding
T28 4856-4860 Sentence denotes N/A.
T29 4862-4895 Sentence denotes Compliance with ethical standards
T30 4897-4917 Sentence denotes Conflict of interest
T31 4918-4974 Sentence denotes The author declares that he has no conflict of interest.
T32 4976-4992 Sentence denotes Ethical approval
T33 4993-5102 Sentence denotes This article does not contain any studies with human participants or animals performed by any of the authors.
T34 5104-5120 Sentence denotes Informed consent
T35 5121-5175 Sentence denotes For this type of study formal consent is not required.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 36-44 Disease denotes COVID-19 MESH:C000657245
36 129-139 Species denotes SARS-CoV-2 Tax:2697049
37 219-230 Species denotes coronavirus Tax:11118
38 372-378 Species denotes people Tax:9606
39 512-522 Species denotes SARS-CoV-2 Tax:2697049
40 1656-1662 Species denotes people Tax:9606
41 1961-1971 Species denotes SARS-CoV-2 Tax:2697049
42 2104-2111 Species denotes patient Tax:9606
43 2181-2188 Species denotes persons Tax:9606
44 2216-2223 Species denotes patient Tax:9606
45 2367-2375 Species denotes patients Tax:9606
46 2573-2580 Species denotes patient Tax:9606
47 2770-2777 Species denotes patient Tax:9606
48 2782-2790 Species denotes patients Tax:9606
49 3189-3197 Species denotes patients Tax:9606
50 3331-3339 Species denotes patients Tax:9606
51 3847-3857 Species denotes SARS-CoV-2 Tax:2697049
52 4211-4221 Species denotes SARS-CoV-2 Tax:2697049
53 4260-4266 Species denotes people Tax:9606
54 4401-4411 Species denotes SARS-CoV-2 Tax:2697049
55 4524-4532 Species denotes patients Tax:9606
56 319-327 Disease denotes COVID-19 MESH:C000657245
57 583-589 Disease denotes deaths MESH:D003643
58 690-696 Disease denotes deaths MESH:D003643
59 1340-1345 Disease denotes death MESH:D003643
60 1479-1487 Disease denotes dementia MESH:D003704
61 1536-1541 Disease denotes death MESH:D003643
62 1580-1585 Disease denotes death MESH:D003643
63 1766-1774 Disease denotes dementia MESH:D003704
64 2991-2996 Disease denotes death MESH:D003643
65 3355-3359 Disease denotes pain MESH:D010146
66 3687-3692 Disease denotes death MESH:D003643
67 3748-3753 Disease denotes death MESH:D003643
68 4162-4167 Disease denotes death MESH:D003643
69 4703-4708 Disease denotes death MESH:D003643
72 5040-5045 Species denotes human Tax:9606
73 5046-5058 Species denotes participants Tax:9606

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T1 13-17 UBERON:0000104 denotes life
T2 36-44 SP_7 denotes COVID-19
T3 92-97 GO:0007612 denotes learn
T4 129-139 SP_7 denotes SARS-CoV-2
T5 219-230 NCBITaxon:11118 denotes coronavirus
T6 319-327 SP_7 denotes COVID-19
T7 372-378 NCBITaxon:9606 denotes people
T8 419-423 GO:0016265 denotes died
T9 512-522 SP_7 denotes SARS-CoV-2
T10 583-589 GO:0016265 denotes deaths
T11 690-696 GO:0016265 denotes deaths
T12 706-711 NCBITaxon:10239 denotes virus
T13 910-915 NCBITaxon:10239 denotes virus
T14 1340-1345 GO:0016265 denotes death
T15 1504-1513 GO:0050890 denotes cognitive
T16 1536-1541 GO:0016265 denotes death
T17 1580-1585 GO:0016265 denotes death
T18 1656-1662 NCBITaxon:9606 denotes people
T19 1680-1683 GO:0016265 denotes die
T20 1833-1837 UBERON:0000104 denotes life
T21 1873-1884 GO:0050890 denotes cognitively
T22 1961-1971 SP_7 denotes SARS-CoV-2
T23 2069-2073 UBERON:0000104 denotes life
T24 2181-2188 NCBITaxon:1 denotes persons
T25 2439-2443 UBERON:0000104 denotes life
T26 2903-2907 UBERON:0000104 denotes life
T27 2991-2996 GO:0016265 denotes death
T28 3273-3279 UBERON:0000105 denotes end of
T29 3280-3284 UBERON:0000104 denotes life
T30 3468-3473 GO:0016265 denotes dying
T31 3547-3550 GO:0016265 denotes die
T32 3642-3647 GO:0016265 denotes dying
T33 3687-3692 GO:0016265 denotes death
T34 3748-3753 GO:0016265 denotes death
T35 3847-3857 SP_7 denotes SARS-CoV-2
T36 3947-3950 UBERON:0001833 denotes lip
T37 4162-4167 GO:0016265 denotes death
T38 4211-4221 SP_7 denotes SARS-CoV-2
T39 4244-4249 GO:0016265 denotes kills
T40 4260-4266 NCBITaxon:9606 denotes people
T41 4401-4411 SP_7 denotes SARS-CoV-2
T42 4445-4448 GO:0016265 denotes die
T43 4476-4487 GO:0050890 denotes cognitively
T44 4558-4562 UBERON:0000104 denotes life
T45 4606-4611 GO:0016265 denotes dying
T46 4641-4645 UBERON:0000104 denotes life
T47 4669-4673 UBERON:0000104 denotes life
T48 4703-4708 GO:0016265 denotes death
T87480 13-17 UBERON:0000104 denotes life
T93460 36-44 SP_7 denotes COVID-19
T60166 92-97 GO:0007612 denotes learn
T49079 129-139 SP_7 denotes SARS-CoV-2
T10676 219-230 NCBITaxon:11118 denotes coronavirus
T99281 319-327 SP_7 denotes COVID-19
T19151 372-378 NCBITaxon:9606 denotes people
T83403 419-423 GO:0016265 denotes died
T84412 512-522 SP_7 denotes SARS-CoV-2
T98435 583-589 GO:0016265 denotes deaths
T51501 690-696 GO:0016265 denotes deaths
T52976 706-711 NCBITaxon:10239 denotes virus
T31422 910-915 NCBITaxon:10239 denotes virus
T25663 1340-1345 GO:0016265 denotes death
T70552 1504-1513 GO:0050890 denotes cognitive
T9756 1536-1541 GO:0016265 denotes death
T79446 1580-1585 GO:0016265 denotes death
T96809 1656-1662 NCBITaxon:9606 denotes people
T28955 1680-1683 GO:0016265 denotes die
T14456 1833-1837 UBERON:0000104 denotes life
T97475 1873-1884 GO:0050890 denotes cognitively
T70535 1961-1971 SP_7 denotes SARS-CoV-2
T68654 2069-2073 UBERON:0000104 denotes life
T35249 2181-2188 NCBITaxon:1 denotes persons
T15158 2439-2443 UBERON:0000104 denotes life
T49460 2903-2907 UBERON:0000104 denotes life
T45900 2991-2996 GO:0016265 denotes death
T90967 3273-3279 UBERON:0000105 denotes end of
T53509 3280-3284 UBERON:0000104 denotes life
T33172 3468-3473 GO:0016265 denotes dying
T59335 3547-3550 GO:0016265 denotes die
T75083 3642-3647 GO:0016265 denotes dying
T22585 3687-3692 GO:0016265 denotes death
T28097 3748-3753 GO:0016265 denotes death
T86563 3847-3857 SP_7 denotes SARS-CoV-2
T43073 3947-3950 UBERON:0001833 denotes lip
T43138 4162-4167 GO:0016265 denotes death
T49581 4211-4221 SP_7 denotes SARS-CoV-2
T40724 4244-4249 GO:0016265 denotes kills
T70631 4260-4266 NCBITaxon:9606 denotes people
T32997 4401-4411 SP_7 denotes SARS-CoV-2
T6463 4445-4448 GO:0016265 denotes die
T56970 4476-4487 GO:0050890 denotes cognitively
T73323 4558-4562 UBERON:0000104 denotes life
T12863 4606-4611 GO:0016265 denotes dying
T40800 4641-4645 UBERON:0000104 denotes life
T39345 4669-4673 UBERON:0000104 denotes life
T88672 4703-4708 GO:0016265 denotes death