Table 4  The SNP markers that explained the largest proportion of variance for fillet weight using 20-SNP windows.
Marker   Chr   Position (cM)   Alleles   VE (%)   Scaffold   Scaffold position   Scaffold size   Loc   Description
WINDOW 1 TOTAL PROPORTION 1.2%
AX-89976492  9  125.19  T/C  0.12  Scaffold_8612  10,780  26,627  Intron  Beta-catenin-interacting protein 1 isoform x1
AX-89970327  9  125.19  A/C  0.10  Scaffold_516  399,414  728,099  Intron  Calsyntenin-1-like isoform x2
AX-89936139  9  125.67  A/C  0.11     Near*  None
AX-89944669  9  125.67  G/T  0.11  Scaffold_32707  921  3946  Exon 1  Nudix hydrolase chloroplastic-like
AX-89940514  9  125.67  T/C  0.10  Scaffold_10308  15,430  21,663  Near*  None
AX-89937961  9  125.67  G/T  0.11  Scaffold_516  586,177  728,099  Exon 6  Properdin
AX-89951506  9  125.67  G/A  0.11  Scaffold_516  555,991  728,099  Exon 3  Transmembrane protein 201-like
WINDOW 2 TOTAL PROPORTION 1.1%
AX-89953042  9  116.09  G/A  0.10  Scaffold_1609  166,168  200,099  Exon 4  Kelch domain-containing protein 8b
AX-89951447  9  117.12  G/A  0.13  Scaffold_43535  864  3113  Near*  None
AX-89975284  9  117.12  A/C  0.11  Scaffold_347  348,224  935,129  Exon 7  Src-like-adapter 2
AX-89940159  9  117.12  T/C  0.12  Scaffold_347  148,757  935,129  Intron  Serine threonine-protein kinase sbk1-like
AX-89924961  9  117.91  C/T  0.13  Scaffold_347  414,782  935,129  Exon 6  Phd finger protein 20-like isoform x3
Chr, chromosome; VE, percentage of the genetic variance explained by the SNP; Loc, location in the scaffold with three possibilities: intron, exon, or near an exon.