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Annotators

Below is a list of pre-registered, automatic annotation services which are interoperable with PubAnnotation.

If you do not know an applicable annotation service to your purpose, you may want to take a look at PubDictionaries, which is a highly customizable, dictionary-based text annotation service.

Name DescriptionMaintainerUpdated_at

1-20 / 37 show all
Cellosaurus_v33 Annotator based on dictionary Cellosaurus version 33 in PubDictionarieszebet2020-04-15
discourse-simplifier A discourse analyzer developed by Univ. Manchester.Jin-Dong Kim2019-08-16
EnjuParser Enju HPSG Parser developed by University of Tokyo.Jin-Dong Kim2020-03-27
FirstAuthorDictionay AikoHIRAKI2019-12-25
Glycan-Abbreviation ISSAKU YAMADA2019-07-17
LappsGridBioNER The Abner Tagger for BioMedical named entity recognition running on the Language Applications Grid.ksuderman2018-04-14
LappsGridGeneTagger GATE Gene tagger running on the Language Applications Gridksuderman2018-04-14
LappsGridStanfordPOSTagger Stanford Part-Of-Speech tagger running on the Language Applications Grid.ksuderman2018-04-14
LappsGridTimeML TimeML event annotator from GATE running on the Language Applications Grid.ksuderman2018-04-14
OntoGeneER OntoGene Entity RecognitionNico Colic2020-03-26
PD-CHEBI Pubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 versionJin-Dong Kim2020-04-19
PD-CLO-B Jin-Dong Kim2020-04-04
PD-FMA-PAE Physical Anatomical Entities from FMAJin-Dong Kim2020-04-18
PD-FMA-PAE-B Batch mode annotator of PD-FMA-PAEJin-Dong Kim2020-04-18
PD-GlycanStructures-B Jin-Dong Kim2020-04-04
PD-GlycoEpitope-B A batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'Jin-Dong Kim2020-04-04
PD-GlycoGenes20190927-B Jin-Dong Kim2020-04-04
PD-GlycoGenes-B Jin-Dong Kim2020-04-04
PD-GlycoProteins-B Jin-Dong Kim2020-04-04
PD-HP Jin-Dong Kim2020-06-23
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